Can Curiosity Kill The Sciences?

I am in the middle of a series of posts about scientific method, so this seemed very much to the point. especially, how to avoid acting like a Doctor Authority Figure Type (DAFT), while still defending the value of expert evidence over anecdote (and, I would add, over ideology)?

The Grumpy Geophysicist

There’s a book out there that seems to be attracting lots of lightning bolts (Steven Pinker’s Enlightenment Now!).  GG is not interested in reading or discussing that, per se. It sounds as though logic and empirical observation got confused in there (they are not the same). What got his attention was one of the responses by Ross Douthat of the New York Times, who essentially argues that smugness by those who purport to know better will stifle real science. The nub of the argument is in this quote:

I’m reasonably confident that both of the stranger worlds of my childhood, the prayer services and macrobiotic diet camps, fit his definition of the anti-empirical dark. And therein lies the oddity: If you actually experienced these worlds, and contrasted them with the normal world of high-minded liberal secularism, it was the charismatic-religious and “health food” regions where people were the…

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In praise of fallibility; why science needs philosophy, with examples from astronomy and chemistry

[Adapted from 3 Quarks Daily] More recent strata lie on top of older strata, except when they lie beneath them. Radiometric dates obtained by different methods always agree, except when they differ.  And the planets in their courses obey Newton’s laws of gravity and motion, except when they depart from them.

As Isaac Asimov reportedly said, “The most exciting phrase to hear in science, the one that heralds new discoveries, is not ‘Eureka!’ [I have found it], but ‘That’s funny …’ ” And there is nothing that distinguishes so clearly between the scientific and the dogmatic mindset as the response to anomalies. For the dogmatist, the anomaly is a “gotcha”, proof that the theory under consideration is, quite simply, wrong. For the scientist, it is an opportunity. If an idea is generally useful, but occasionally breaks down, something unusual is going on and it’s worth finding out what. The dogmatist wants to see questions closed, where the scientist wants to keep them open. This is perhaps why the creationist denial of science can often be found among those professions that seek decision and closure, such as law and theology.

The rights and wrongs of falsification

Karl Popper

Karl Popper (LSE Library photo, 1980s)

Dogmatists regularly invoke the name of Karl Popper, and the work he did in the 1930s. Popper placed heavy emphasis on falsifiability, denouncing as unscientific any doctrine that could not be falsified. Freud’s theories, for example, Read the rest of this entry

Evolution, the Iraqi Translation Project, and science in the Arab World

Translations change the course of civilisations. The translation project begun by Caliph al-Mansour in the 8th century CE, and accelerated under his grandson Harun al-Rashid, made available in Arabic scholarly writings from Greek, Aramaic (Syriac), Persian, and Indian sources, and laid the foundation for the flowering of science and philosophy in the Islamic world during Europe’s Dark Ages. A second translation project, from the 10th century onwards, was in the other direction, from Arabic to Latin. Among its initiators was Gerbert d’Aurillac, the future Pope Sylvester II, and it reached its height in Toledo in Spain where for a while Christianity and Islam came into close contact and where Gerard of Cremona translated al Khwarismi and Avicenna (ibn Sina), as well as Arabic versions of works by Ptolemy and Aristotle. It refreshed Europe’s contact with classical learning, while also conveying what was then current scholarship. It was the pathway through which Christian Europe rediscovered Aristotle, while Avicenna’s clinical expertise is mentioned in the Canterbury Tales. His writings on geology, which I have discussed elsewhere, were among those translated at this time, but originally misattributed to Aristotle.

Avicenna_Expounding_Pharmacy_to_his_Pupils_Wellcome_L0008688L: Avicenna expounding pharmacy to his pupils, from the 15th century “Great Cannon [sic] of Avicenna”; Wellcome Library via Wikimedia. Click to enlarge.

Happily, if belatedly, another translation project is now under way, from English to Arabic, focused largely on science-related topics of general interest, with special attention to evolution.

Why evolution? Not only because of its central role in modern life sciences, but because Read the rest of this entry

Intelligent Design or intricate deception? What I told students during the Kitzmiller trial

Dec 20 is the anniversary of the Kitzmiller decision, an early Christmas day present for science and common sense. But when I first wrote here “Judge E. Jones III’s ruling is … unlikely to be challenged unless at some later date the US Supreme Court acquires a creationist majority”  I had not foreseen a creationist Vice-President. Take nothing for granted.

Primate's Progress

Unt The University of North Texas, where I was teaching in 2005

Kitzmiller v Dover Area School District, in which judgment was pronounced on 20th December 2005, is the court case that established that Intelligent Design is not science, but a form of religiously motivated creationism, and as such may not be taught in publicly funded schools in the US.This is a shortened version of what I told the students at Texas Academy of Mathematics and Science, University of North Texas’s early admissions programme, whom I was privileged to be teaching at the time of the trial. I have omitted my discussion of the embarrassing Intelligent Design pseudotext, Of Pandas and People, and the even more embarrassing statement that the Dover School Board instructed teachers to read, for reasons of space and because I have discussed them here before.  I have tried to avoid rewriting in…

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If you are interested in evolution, get this book

EVOLUTION: What the Fossils Say and why it Matters, Donald R. Prothero (2nd edition)

If you are interested in evolution, get this book. And make sure that your library gets it. And your children’s highschool library. Incidentally, it’s incredible value; list price $35.00/£27.95 from Columbia University Press, with over 400 lavishly illustrated pages.

The book is a comprehensive survey of the fossil record, supplemented at times with other evidence, and framed as one long argument against creationism. It opens with a general discussion of the ideas behind current evolutionary thinking, moves on to a survey of specific topics in (mainly animal) evolution, from the origins of life to the emergence of humanity, and concludes with a brief discussion of the threat that creationism poses to rational thinking. The argument is laid out clearly in the seemingly artless prose of an accomplished writer in love with his subject matter, with plain language explanations that presume no prior knowledge, while the detailed discussions of specific topics give enough detail to be of value, I would imagine, even to a professional in the field. The author is an experienced educator and researcher, with thirty books ranging from the highly technical to the popular, some 300 research papers, and numerous public appearances to his credit, and the work is copiously illustrated with photos, diagrams, and drawings by the author’s colleague, Carl Buell. These illustrations are an integral part of the work, graphically displaying the richness of the data at the heart of the argument. Read the rest of this entry

Take the Pro-Truth Pledge (because we’re all fallible)

Pro-Truth Pledge LogoI  learnt about this pledge from the Skeptic Reading Room. And while I generally loathe public pledges (too much virtue signalling for my liking), I am making an exception for this one, in response to our exceptional times. And the fine print makes admirable reading. Besides,  several hundred public figures and organizations have signed it, including Steven Pinker and Peter Singer, and what’s good enough for them is good enough for me. Many dozens of politicians have signed it as well, and one of the aims is to persuade more to do so, and hold them accountable.

Truth matters. Propagating untruth is big business and big politics. The traditional guardians of truth have abdicated, are compromised, or lack traction. By default, the job of protecting truth falls to us. We need to take our responsibility seriously.

We are all drawn towards confirmation bias, group think (our own group, of course!), lack of diligence in verifying material that agrees with us, lack of charity towards opponents, and more besides. So the pledge is no trivial commitment and I certainly found that reading it gave me much pause for thought about my own behaviour.

Here’s what the pledge commits you to. You can sign it here. I have. Hold me to it.

I Pledge My Earnest Efforts To:

Share truth

  • Verifyfact-check information to confirm it is true before accepting and sharing it
  • Balance: share the whole truth, even if some aspects do not support my opinion
  • Cite: share my sources so that others can verify my information
  • Clarify: distinguish between my opinion and the facts

Honor truth

  • Acknowledge: acknowledge when others share true information, even when we disagree otherwise
  • Reevaluate: reevaluate if my information is challenged, retract it if I cannot verify it
  • Defend: defend others when they come under attack for sharing true information, even when we disagree otherwise
  • Align: align my opinions and my actions with true information

Encourage truth

  • Fix: ask people to retract information that reliable sources have disproved even if they are my allies
  • Educate: compassionately inform those around me to stop using unreliable sources even if these sources support my opinion
  • Defer: recognize the opinions of experts as more likely to be accurate when the facts are disputed
  • Celebrate: celebrate those who retract incorrect statements and update their beliefs toward the truth

What the Bishop said to the Biologist; a Victorian scandal revisited

Yes, Bishop Wilberforce really did ask TH Huxley, “Darwin’s bulldog”, whether he would prefer an ape for his grandfather, and a woman for his grandmother, or a man for his grandfather, and an ape for his grandmother. And Huxley really did say that he would prefer this to descent from a man conspicuous for his talents and eloquence, but who misused his gifts to ridicule science and obscure the light of truth. This and more at the very first public debate regarding Darwin’s work on evolution, only months after the publication of On the Origin of Species.

Oxf-uni-mus-nhL: The Oxford Museum of Natural History, where the event took place. Click on this and other images to enlarge

The debate took place at the May 1860 meeting of the British Association for the Advancement of Science. The actual exchange is whitewashed out of the account of the meeting in the gentlemanly Athenaeum, leading some historians to wonder whether it really occurred, but a recently rediscovered contemporary account places the matter beyond doubt. What I find even more interesting, however, is the way in which argument and counter-argument between Wilberforce and Huxley, and between other supporters and opponents of the concept of evolution, prefigure arguments still being used today.

image from upload.wikimedia.orgR: 150th anniversary commemorative plaque, outside the Museum

The Athenaeum account is freely available here. The fuller account, Read the rest of this entry

tl; dr Wilberforce-Huxley encounter; Oxford Chronicle and Athenaeum accounts

1: Transcript of discussion following Draper’s initial presentation, from Oxford Chronicle and Berks and Bucks Gazette, 21 July 1860, with Athenaeum account for comparison, as reported by Richard England, with my own paragraphing for ease of reading, and with the most relevant Athenaeum alternatives for comparison; 2: Full transcript of Athenaeum accounts of  this meeting, including Prof. Draper’s presentation, preceded by its account of the meeting of 19th July, where Huxley had been goaded into participation by remarks from Richard Owen

1: Saturday session, Section D.—Zoology and botany, including physiology (Oxford Chronicle)

—Professor HUXLEY, being called upon by the chairman, declined entering into the subject, alleging the undesirability of contesting a scientific subject involving nice shades of idea before a general audience, who could not be supposed to judge upon its merits.

The discussion was then commenced by the Rev. R. GRESWELL, who denied Read the rest of this entry

Evolution Before Our Eyes: Complex Mutations in Microbes Giving New Functions

I cannot improve on this excellent survey, with its refutation of the creationist’s crucial denial that evolution generates new functional information; the most I can do is help publicise it.

Disclosure: I am cited in a footnote

Letters to Creationists

OUTLINE

( 1 ) Barry Hall’s lac Bug

( 2 ) Lenski’s Long Term E. Coli Evolution Experiment

         Lenski’s E. coli Evolve Ability to Metabolize Citrate under Aerobic Conditions

( 3 ) Bacteriophage Lambda Evolves a New Protein Binding Site Using Four Mutations

( 4 ) The Significance of These Complex Mutations

         Plate Tectonics: An Example of Evidences

         Diverse Evidence for Evolution

( 5 ) The Core Issue in Rejecting Evolution

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

( 1 ) Barry Hall’s lac Bug

Lactose is a sugar that bacteria can use as a food. In order to do this, they first have to cut lactose in half, releasing two…

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War on Science, EPA edition

EPA administrator Scott Pruitt (image via Science Magazine article)

The Grumpy Geophysicist is too kind. “It is hard not to look at these actions and them as ostrich-like in trying to avoid hearing things you don’t want to hear.” No; the target is not what they get to hear, so much as what we get to hear. they just don’t want scientific advances that generate news stories about inconvenient facts like global warming or pollution

The Grumpy Geophysicist

UPDATE: Science has a piece fully explaining this latest expulsion of academic science from the EPA.

Some time ago, GG suggested that what many were taking as a “war on science” was more a war on particular parts of science, that the offenders were in fact exploiting science where it was financially remunerative and opposing it where it wasn’t. But actions at the Environmental Protection Agency really look like outright war on science, period.

Consider these actions:

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